PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cotton_A_21534_BGI-A2_v1.0
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family B3
Protein Properties Length: 100aa    MW: 11628.8 Da    PI: 10.4275
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cotton_A_21534_BGI-A2_v1.0genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B354.12.9e-17184594
                                -..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSE CS
                          B3  5 ltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrse 89
                                ++ps v +  +++lpk+f++ + ++ + + t++l  e+g+++++++ +++k     l++GWk+F k++gL +gD +vF+l++ s+
  Cotton_A_21534_BGI-A2_v1.0  1 MIPSVVCRGFWMSLPKEFCQLN-LP-NHDATVILVGETGKEYRINFLVQRKA----LSGGWKRFSKEHGLLVGDALVFHLIRPSK 79
                                5788888999*********666.44.45679***************655555....9************************9899 PP

                                E..EE CS
                          B3 90 felvv 94
                                f+ + 
  Cotton_A_21534_BGI-A2_v1.0 80 FKVLS 84
                                96655 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd100174.87E-19183No hitNo description
PfamPF023621.4E-14186IPR003340B3 DNA binding domain
PROSITE profilePS5086311.857188IPR003340B3 DNA binding domain
SuperFamilySSF1019362.75E-20186IPR015300DNA-binding pseudobarrel domain
SMARTSM010191.5E-12194IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.105.3E-17283IPR015300DNA-binding pseudobarrel domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 100 aa     Download sequence    Send to blast
MIPSVVCRGF WMSLPKEFCQ LNLPNHDATV ILVGETGKEY RINFLVQRKA LSGGWKRFSK  60
EHGLLVGDAL VFHLIRPSKF KVLSHIYIYI HKKIYKLKET
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012480251.11e-55PREDICTED: B3 domain-containing protein Os01g0234100-like isoform X1
RefseqXP_012480253.19e-56PREDICTED: B3 domain-containing protein Os01g0234100-like isoform X2
SwissprotQ10QS97e-26Y3845_ORYSJ; B3 domain-containing protein Os03g0184500
TrEMBLA0A0D2RSA71e-55A0A0D2RSA7_G
TrEMBLA0A0D2SMJ61e-55A0A0D2SMJ6_G
STRINGSolyc04g079130.2.12e-27(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM2226845
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G42700.14e-22B3 family protein